Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015935222.1_cds_XP_016481100.1_72470
CDS Infomation

[gene=LOC107802165] [db_xref=GeneID:107802165] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016481100.1] [location=join(18522..18851,19614..19745,20134..20361,20448..20495,20566..20773,21407..21597,21722..22114)] [gbkey=CDS]
Sequence

ATGGGAGGATTTAGTTTTAGGAGCTTCACATTTATGTTCATAGTAGCATTTCTTGTTTGG
TCATCAAATGTAGAGACTTGTTATGCAAGAAGAGGCAGGCATTGGAGACAAACAACAACT
TCCTCTGCTTCTTTGTACAAGAAGAAAGAAAAGTCTCATGGTAGCAATCACCATCATAAT
AATGGGAGCAAGTCGAAGCCAAAACACTCGTCTCCACCAAGTATGCCAACGAACCCGCCA
AGAAAAGGCTACGACGATGTGCCTTCGTCCACCATCTTCGATGTAAGAAGTTTCGGTGCC
ACTGGAGATGGCAAGACTGATGACACTAAGGCATTTCAGGCTGCATGGGCAGCTGCTTGT
AAAGTGGAAGCTTCGACGATTGTCGTTCCGTCACAATATGTATTCCTTGTAGGACCAATT
TCATTCTCAGGTCCATACTGTCAGCACAACATTGTTTTTCAGCTTGATGGAACAATAATT
GCTCCAGTAGATGCCAAATCTTGGGGTTCAGGTCTTATGCAATGGCTTGAATTTACCAAA
TTGGTTGGGATTACAGTTAAAGGAAGCGGGTTAATTGATGGGAGAGGTGCAGTTTGGTGG
CAAGATACCCCATATGATGATCCTCTAGATGACGAATTAAAACTAATCATTCCATTAAAC
AAGACATCATTGAGATATCCTCCAATTCCTCTAAATAGCTCACTTGGTGGTGGAAAAATG
CCAAGCATTAAGCCAACGGCACTTCGATTCTATGGGAGTTTTAATGTTACTGTAACAGGC
ATCATAATTCAGAATAGTCAACAATGCCATCTCAAATTTGACAATTGCATAGGGGTAACA
GTATACAATTTCACTGTCTCATCTCCTGGTGATAGTCCTAATACAGATGGAATCCATTTA
CAGAACTCCAAAGACGTGCTAATCCGCAGTTCCAACATTGCTTGTGGAGATGACTGTGTC
TCCATACAAACTGGATGCACCAATGTGTATGTACACAACATAAATTGTGGACCAGGACAT
GGAATCAGCATTGGAAGTCTGGGGAAAGACAACACAAAGGCTTGTGTTTCAAACATTACG
GTCAAAGATGTTGTTATGCAAAACACAATGAATGGTGTCAGGATTAAGACGTGGCAGGGA
GGGTCAGGGTCAGTACAAGGAGTGTTTTTCTCAAACATTCAAGTTTCAGAAGTCCAACTA
CCAATTGTAATTGATCAGTTCTATTGCGACAAGAGCAAATGTAAGAACCAGACGTCTGCA
GTGGCTTTATCAGGAATCAACTTTGAAAGAATTAGAGGAACATATACAGTAAAACCAGTG
CATTTAGCATGCAGTGACAGTATGCCATGTCAAGACGTGACCTTGACGGATATCCAACTA
AAGCCAATACAAGAGCGTTACCACATGTATGATCCATATTGTTGGCAGACGTTCGGGGAG
TTGTATACTCCTACTCTACCGCCAATTGATTGTTTACAAGTCGGCAAACCATCGAGCAAC
AGAATTCAGGGAGATCATGATCAATGCTAG

Peptide Sequence

PEP ID

XP_016481100.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MGGFSFRSFTFMFIVAFLVWSSNVETCYARRGRHWRQTTTSSASLYKKKEKSHGSNHHHN
NGSKSKPKHSSPPSMPTNPPRKGYDDVPSSTIFDVRSFGATGDGKTDDTKAFQAAWAAAC
KVEASTIVVPSQYVFLVGPISFSGPYCQHNIVFQLDGTIIAPVDAKSWGSGLMQWLEFTK
LVGITVKGSGLIDGRGAVWWQDTPYDDPLDDELKLIIPLNKTSLRYPPIPLNSSLGGGKM
PSIKPTALRFYGSFNVTVTGIIIQNSQQCHLKFDNCIGVTVYNFTVSSPGDSPNTDGIHL
QNSKDVLIRSSNIACGDDCVSIQTGCTNVYVHNINCGPGHGISIGSLGKDNTKACVSNIT
VKDVVMQNTMNGVRIKTWQGGSGSVQGVFFSNIQVSEVQLPIVIDQFYCDKSKCKNQTSA
VALSGINFERIRGTYTVKPVHLACSDSMPCQDVTLTDIQLKPIQERYHMYDPYCWQTFGE
LYTPTLPPIDCLQVGKPSSNRIQGDHDQC

Transcript Sequence

Gene sequence data has not been registered.